M. Martin, A. Strasser, N. Baumgarth, F. Cicuttini, K. Welch, E. Salvaris and A. Boyd. A novel cellular model (SPGM-1) of switching between the pre B cell and myelomonocytic lineages. 1993, J. Immunol. 150, 4395-4406.

N. Baumgarth, L.E. Brown, D.C. Jackson and A. Kelso: Novel features of the T cell response to influenza infection: T cells increase levels of IFN- g and maintain high levels of IL-5 and IL-10. 1994, J. Virol. 68, 7575-7581.

N. Baumgarth and A. Kelso. In vivo blockade of gamma interferon affects the influenza virus-induced humoral and the local cellular immune response in the lung tissue. 1996, J. Virol. 70, 4411-4418.

N. Baumgarth and A. Kelso. Functionally distinct T cells in three compartments of the respiratory tract after influenza virus infection. 1996, Eur. J. Immunol. 26:2189-2197.

H Fell H. Fell, S. L. Silins, N. Baumgarth and M. F. Good. Plasmodium falciparum specific T cell clones from non-exposed and exposed donors recognize conserved epitopes but are highly diverse in TCR b chain V segment usage: evidence against immunodominant cross-reactive epitopes. 1996, Int. Immunol. 8:1877-1887.

N. Baumgarth, M. Egerton, and A. Kelso. Activated T cells from draining lymph nodes and an effector site differ in their responses to TCR stimulation. 1997, J. Immunol. 159:1182-1191.

M. Amano, N. Baumgarth, M. Dick, L.A. Herzenberg and S. Strober. CD1 expression defines subsets of follicular and marginal zone B cells in the spleen: B 2m-dependent and independent forms. 1998, J. Immunol. 161:1710 -1717.

N. Baumgarth, M. A. Anderson, D. Haugland, R.M. Gerstein, I.T. Tjioe, L.A. Herzenberg, and L.A. Herzenberg. Pairs of violet-light-excited fluorochromes for flow cytometric analysis. 1998, Cytometry 33:435 - 444.

N. Baumgarth, O.C. Herman, G.C. Jager, L. Brown , L. A. Herzenberg and L.A. Herzenberg. Innate and acquired humoral immunities to influenza virus are mediated by distinct arms of the immune system. 1999, Proc. Natl. Acad. Sci, USA, 96: 2250 - 2255.

M. Bigos, N. Baumgarth, G. C. Jager, O. C. Herman, T. Nozaki, R. T. Stovel, D. R. Parks and L.A. Herzenberg. Nine color eleven parameter immunophenotyping using three laser flow cytometry. 1999, Cytometry 36: 36-45.

C. Pan, N. Baumgarth, and J. R. Parnes. Dual and opposing roles for CD72 in B cell development and functional B cell activation, 1999, Immunity 11:495 - 506.

M. P. Crowley, A. M. Fahrer, N. Baumgarth, J. Hampl, I. Gutgemann, L. Teyton and Y.-h. Chien. A population of murine gd T cells that recognizes a nonclassical MHC class I molecule, 2000, Science 287:314 – 316.

N. Baumgarth, G.C. Jager, O.C. Herman, L.A. Herzenberg and L.A. Herzenberg. CD4+ T cells derived from B cell-deficient mice inhibit the establishment of peripheral B cell pools, 2000, Proc. Natl. Acad. Sci, USA, 97: 4766 - 4771.

N. Baumgarth, O.C. Herman, G.C. Jager, L. E. Brown, L.A. Herzenberg and J. Chen. B-1 and B-2 cell-derived IgM antibodies are non-redundant components of the protective response to influenza virus infection, 2000, J. Exp. Med. 192: 271-280.

N. Baumgarth. A two-phase model of B cell activation, 2000, Immunol. Rev., 176: 171-180.

  N. Baumgarth, and M. Roederer. A practical approach to multicolor flow cytometry for immunophenotyping. 2000, J. Immunol. Methods, 243:77-97.

 L.-S. Lu, J. Tung, N. Baumgarth, O. Herman, M. Gleimer, L.A. Herzenberg and L. A. Herzenberg. Identification of a germline pro-B cell subset that distinguishes the fetal/neonatal from the adult B cell development pathway. 2002, Proc. Natl. Acad. Sci, 99: 3007 - 3012.

 R. F. Tsuji, M Szczepanik, I. Kawikova, R. Campos, M. Akahira-Azuma, N. Baumgarth, L.A. Herzenberg, and P.W. Askenase. 2002 B cell-dependent T cell responses: IgM antibodies are required to elicit contact sensitivity. J. Exp. Med. 196:1277 – 1290.

 M. Y. Sangster, J. M. Riberdy, M. Gonzalez, D. J. Topham, N. Baumgarth and P.C. Doherty. An early CD4+ T cell-dependent IgA response to influenza infection in the absence of cognate help. J. Exp. Medicine, J. Exp. Med. 198: 1011 – 1021

 N. Baumgarth, R. Szubin, M. Costa, J. Palefski, G. Dolganov, M. Watnik, D. Greenspan, R. Jordan, M. Roederer and J. Greenspan. Laser dissection microscopy-assisted gene expression profiling reveals tissue substructure specific effects of human papillomavirus infection. 2004 Am. J. Pathology, 165:707 – 718

 W. L. Chang, N. Baumgarth and P. A. Barry. Human cytomegalovirus-encoded interleukin-10 homolog alters the functions of dendritic cells at multiple steps. 2004 J. Virology, 78:8720 – 8731

N. Baumgarth, E. S. Coro, W.L.W. Chang, V.P. Doucett. Type I Interferon Directly Activates B Cells for Maximal Early Antibody Responses to Influenza Virus Infection, submitted.

 V. P. Doucett, W. Gerhard, K. Owler, D. Curry, L. Brown and N. Baumgarth. Enumeration and characterization of virus-specific B cells by multicolor flow cytometry, submitted.

 K. Rothaeusler and N. Baumgarth. BrDU labeling in conjuction with 10-color flow cytometry to assess proliferation of rare cell populations in vivo, in preparation.

V. P. Doucett, W. Gerhard, K. Owler, D. Curry, L. Brown and N. Baumgarth. Enumeration and characterization of virus-specific B cells by multicolor flow cytometry. 2005 J. Immunol. Methods 303: 40 – 52

K. Rothaeusler and N. Baumgarth. BrDU labeling in 10-color flow cytometry precisely determines turn-over rates of small B cell subsets in vivo, 2006, Cytometry, 69A: 249 - 259.

E. S. Coro, W.L.W. Chang and N. Baumgarth. Type I Interferon is the first direct signal for local B cells following influenza virus Infection, 2006, J. Immunol. 176:4343 - 4351. 

P. K. Tsourkas, N. Baumgarth, S. I. Simon and S. Raychaudhuri Mechanisms of B-cell synapse formation predicted by Monte Carlo simulation, 2007, Biophysics Journal 92: 4196 - 4208.

W. L. W. Chang, E. S. Coro, F. Rau, Y. Xiao, D. J. Erle and N. Baumgarth. Influenza virus infection causes global respiratory tract B cell response modulation via type I interferon. 2007, J. Immunology, 178: 1457 – 1467.

W.L. W. Chang, N. Baumgarth, and P. A. Barry. Exposure of myeloid dendritic cells to exogenous or endogenous IL10 during maturation determines their longevity. 2007, J. Immunology, 178:7794 – 7804. 

McLaughlin BE, Baumgarth N, Bigos M, Roederer M, De Rosa SC, Altman J, Nixon D, Ottinger J, Oxford, C, Evans, TG. Asmuth DM. Nine-Color Flow Cytometry for Accurate Measurement of T Cell Subsets and Cytokine Responses. Part I: Panel Design by an Empiric Approach 2008 Cytometry 73A: 400-410

McLaughlin BE, Baumgarth N, Bigos M, De Rosa SC, Altman JD, Roederer M, Nixon D, Ottinger J, Sinclair E, Li J, Beckett L and Asmuth DM Nine-Color Flow Cytometry for Accurate Measurement of T Cell Subsets and Cytokine Responses. Part II: Panel Performance Across Different Instrument Platforms 2008, Cytometry 73A: 411 – 420.

Jensen, K. Su, X. Shin, S. Li, L. Youssefl, S., Yamasaki, S., Steinman, L. Saito, T., Locksley, R, N. Baumgarth and Y.-h. Chien. Gamma Delta T cells that develop in the presence or absence of ligand differentially produce IFNg and IL-17. 2008 Immunity, in press.

R. Szubin, W. L. W. Chang, T. Greasby, L. Beckett and N. Baumgarth Rigid Interferon-alpha Subtype Responses of Human Plasmacytoid Dendritic Cells, submitted.

Y. S. Choi and N. Baumgarth Dual role for B-1a cells in immunity to influenza virus infection. 2008, submitted.

F. C. Rau, J. D. Lerche and N. Baumgarth Role of CD86 on the regulation of early B cell responses to influenza virus, 2008, in preparation.

Y. S. Choi and N. Baumgarth A novel B-1 cell population in the bone marrow generates much of the natural IgM. 2008, in preparation.

 Book chapters and Other Publications

N. Baumgarth. Isolierung von porcinem sekretorischem Immunglobulin A und der freien sekretorischen Komponente sowie Herstellung von dagegen gerichteten monoklonalen und polyklonalen Antikörpern. [Isolation of porcine secretory IgA and free secretory component and production of polyclonal and monoclonal antibodies against these proteins]. Thesis for the german Doctor of Veterinary Science (1989), Institute of Microbiology and Infectious Diseases, School of Veterinary Medicine, 3000 Hannover, Bischofsholer Damm 15, Germany.

N. Baumgarth, F. Klobasa and K. Petzoldt. Isolation of secretory immunoglobulin A and free secretory component from porcine whey. In: Advances in Mucosal Immunology. (ED) T. T. MacDonald, S.J.Challacombe, P.W.Bland, C.R.Stokes, R.V.Heatly, A.Mcl Mowat. Kluwer Acad. Publ. 1990, 545-547.

N. Baumgarth and A. Kelso. Does influenza virus infection induce just one type of T cell response? Options for the control of influenza III. (Ed.) L.E. Brown, A.W. Hampson, R.G. Webster. Elsevier, 1996, 256-262.

A. Kelso, N. Baumgarth, and Penny Groves. Cytokine-producing T cells in influenza virus infection. Options for the control of influenza III. (Ed.) L.E. Brown, A.W. Hampson, R.G. Webster. Elsevier, 1996, 170-179.

N. Baumgarth and A. Kelso. Interferon- g and the TH1/TH2 paradigm. In: Gamma Interferon In Antiviral Defense. (Ed.) G. Karupiah. R.G. Landes, Texas, USA. 1997, 19-38.

N. Baumgarth, M. Egerton, J.-P. Levraud, P. Kourilsky, and A. Kelso. Lung tissue T cells and their responses to influenza virus infection. In: Mucosal Solutions. Advances in mucosal immunology. (Eds.) A.J. Husband, K. W. Beagley, R. L. Clancy, A.M. Collins, A.W. Cripps, D.L. Emery. 1997, Vol. 1, 269-278.

N. Baumgarth, J. Chen, O. C. Herman, G. C. Jager, and L.A. Herzenberg. The role of B-1 and B-2 cells in immune protection from influenza virus infection. In: Mechanisms of B cell neoplasia 16 th workshop. (Eds.) M. Potter and F. Melchers. Curr. Top. Microbiol. Immunol. 2000, 252: 163 – 170.

L. A. Herzenberg, N. Baumgarth, J. A. Wilshire. B-1 cell origins and V H repertoire determination. In: Mechanisms of B cell neoplasia 16 th workshop. (Ed.) M. Potter. Curr. Top. Microbiol. Immunol. 2000, 252: 3 – 14.

N. Baumgarth. Secreted IgM versus BlyS in germinal center formation. (Commentary) Nature Immunol, 2000, 1:179.

Roederer, M; De Rosa, S; Bigos, M; Parks, DR ; Baumgarth, N; Herzenberg, LA; Herzenberg, LA The state of polychromatic flow cytometry Cytometry (Suppl). 2002. 122-123

N. Baumgarth and M. Bigos. Optimization of Emission Optics. In Methods in Cell Biology, Vol. 75. Cytometry: New Developments, Fourth Edition . Eds. Z. Barzynkiewicz, M. Roederer and H. Tanke. Academic Press, 2004, pages 3 - 22

N. Baumgarth. B-cell Immunophenotyping. In Methods in Cell Biology, Vol. 75. Cytometry: New Developments, Fourth Edition. Eds. Z. Barzynkiewicz, M. Roederer and H. Tanke. Academic Press, 2004, pages 643 – 662

N Baumgarth, J. Tung and L. A. Herzenberg. Inherent specificities in natural antibodies: a key to immune defense against pathogen invasion. Springer Seminars in Immunopathology, in press

K. Rothaeusler and N. Baumgarth BrdU detection assay for use in multicolor flow cytometry In: Current Protocols in Cytometry, 2007.

N. Baumgarth and C. L. Bevins. Autoimmune disease: Skin-deep but complex. 2007. Nature, 449: 551 – 553

N. Baumgarth, Y.S. Choi, K. Rothaeusler, Y. Yang and L.A. Herzenberg B Cell Lineage Contributions to Antiviral Host Responses, Current Topics in Microbiology and Immunology, 2008, 319:41-61.